Anelli T, Alessio M, Mezghrani A, Simmen T, Talamo F, Bachi A, Sitia R

ERp44, a novel endoplasmic reticulum folding assistant of the thioredoxin family.

EMBO J 2002; 835-44. doi: 10.1093/emboj/21.4.835

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Fratelli M, Demol H, Puype M, Casagrande S, Eberini I, Salmona M, Bonetto V, Mengozzi M, Duffieux F, Miclet E, Bachi A, Vandekerckhove J, Gianazza E, Ghezzi P

Identification by redox proteomics of glutathionylated proteins in oxidatively stressed human T lymphocytes.

Proc Natl Acad Sci U S A 2002; 3505-10. doi: 10.1073/pnas.052592699

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Galardi S, Fatica A, Bachi A, Scaloni A, Presutti C, Bozzoni I

Purified box C/D snoRNPs are able to reproduce site-specific 2'-O-methylation of target RNA in vitro.

Mol Cell Biol 2002; 6663-8. doi: 10.1128/MCB.22.19.6663-6668.2002

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Lévy F, Burri L, Morel S, Peitrequin AL, Lévy N, Bachi A, Hellman U, Van den Eynde BJ, Servis C

The final N-terminal trimming of a subaminoterminal proline-containing HLA class I-restricted antigenic peptide in the cytosol is mediated by two peptidases.

J Immunol 2002; 4161-71. doi: 10.4049/jimmunol.169.8.4161

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Consogno G, Manici S, Facchinetti V, Bachi A, Hammer J, Conti-Fine BM, Rugarli C, Traversari C, Protti MP

Identification of immunodominant regions among promiscuous HLA-DR-restricted CD4+ T-cell epitopes on the tumor antigen MAGE-3.

Blood 2003; 1038-44. doi: 10.1182/blood-2002-03-0933

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Ortega A, Niksic M, Bachi A, Wilm M, Sánchez L, Hastie N, Valcárcel J

Biochemical function of female-lethal (2)D/Wilms' tumor suppressor-1-associated proteins in alternative pre-mRNA splicing.

J Biol Chem 2003; 3040-7. doi: 10.1074/jbc.M210737200

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Borgonovo B, Cocucci E, Racchetti G, Podini P, Bachi A, Meldolesi J

Regulated exocytosis: a novel, widely expressed system.

Nat Cell Biol 2002; 955-62. doi: 10.1038/ncb888

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Paron I, Scaloni A, Pines A, Bachi A, Liu FT, Puppin C, Pandolfi M, Ledda L, Di Loreto C, Damante G, Tell G

Nuclear localization of Galectin-3 in transformed thyroid cells: a role in transcriptional regulation.

Biochem Biophys Res Commun 2003; 545-53. doi: 10.1016/s0006-291x(03)00151-7

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Lolli G, Thaler F, Valsasina B, Roletto F, Knapp S, Uggeri M, Bachi A, Matafora V, Storici P, Stewart A, Kalisz HM, Isacchi A

Inhibitor affinity chromatography: profiling the specific reactivity of the proteome with immobilized molecules.

Proteomics 2003; 1287-98. doi: 10.1002/pmic.200300431

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Anelli T, Alessio M, Bachi A, Bergamelli L, Bertoli G, Camerini S, Mezghrani A, Ruffato E, Simmen T, Sitia R

Thiol-mediated protein retention in the endoplasmic reticulum: the role of ERp44.

EMBO J 2003; 5015-22. doi: 10.1093/emboj/cdg491

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Bonaldi T, Talamo F, Scaffidi P, Ferrera D, Porto A, Bachi A, Rubartelli A, Agresti A, Bianchi ME

Monocytic cells hyperacetylate chromatin protein HMGB1 to redirect it towards secretion.

EMBO J 2003; 5551-60. doi: 10.1093/emboj/cdg516

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Carro S, Bergo A, Mengoni M, Bachi A, Badaracco G, Kilstrup-Nielsen C, Landsberger N

A novel protein, Xenopus p20, influences the stability of MeCP2 through direct interaction.

J Biol Chem 2004; 25623-31. doi: 10.1074/jbc.M402571200

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Saverino D, Ghiotto F, Merlo A, Bruno S, Battini L, Occhino M, Maffei M, Tenca C, Pileri S, Baldi L, Fabbi M, Bachi A, De Santanna A, Grossi CE, Ciccone E

Specific recognition of the viral protein UL18 by CD85j/LIR-1/ILT2 on CD8+ T cells mediates the non-MHC-restricted lysis of human cytomegalovirus-infected cells.

J Immunol 2004; 5629-37. doi: 10.4049/jimmunol.172.9.5629

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Areces LB, Matafora V, Bachi A

Analysis of protein phosphorylation by mass spectrometry.

Eur J Mass Spectrom (Chichester) 2004; 383-92. doi: 10.1255/ejms.601

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Conti A, Sanchez-Ruiz Y, Bachi A, Beretta L, Grandi E, Beltramo M, Alessio M

Proteome study of human cerebrospinal fluid following traumatic brain injury indicates fibrin(ogen) degradation products as trauma-associated markers.

J Neurotrauma 2004; 854-63. doi: 10.1089/0897715041526212

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Jolliffe NA, Brown JC, Neumann U, Vicré M, Bachi A, Hawes C, Ceriotti A, Roberts LM, Frigerio L

Transport of ricin and 2S albumin precursors to the storage vacuoles of Ricinus communis endosperm involves the Golgi and VSR-like receptors.

Plant J 2004; 821-33. doi: 10.1111/j.1365-313X.2004.02167.x

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Corti V, Cattaneo A, Bachi A, Rossi RE, Monasterolo G, Paolucci C, Burastero SE, Alessio M

Identification of grass pollen allergens by two-dimensional gel electrophoresis and serological screening.

Proteomics 2005; 729-36. doi: 10.1002/pmic.200401038

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Scielzo C, Ghia P, Conti A, Bachi A, Guida G, Geuna M, Alessio M, Caligaris-Cappio F

HS1 protein is differentially expressed in chronic lymphocytic leukemia patient subsets with good or poor prognoses.

J Clin Invest 2005; 1644-50. doi: 10.1172/JCI24276

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Capponcelli S, Pedrini E, Cerone MA, Corti V, Fontanesi S, Alessio M, Bachi A, Soddu S, Ribatti D, Picci P, Helman LJ, Cantelli-Forti G, Sangiorgi L

Evaluation of the molecular mechanisms involved in the gain of function of a Li-Fraumeni TP53 mutation.

Hum Mutat 2005; 94-103. doi: 10.1002/humu.20192

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Giabbai B, Sidobre S, Crispin MD, Sanchez-Ruìz Y, Bachi A, Kronenberg M, Wilson IA, Degano M

Crystal structure of mouse CD1d bound to the self ligand phosphatidylcholine: a molecular basis for NKT cell activation.

J Immunol 2005; 977-84. doi: 10.4049/jimmunol.175.2.977

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Piccini A, Russo C, Gliozzi A, Relini A, Vitali A, Borghi R, Giliberto L, Armirotti A, D'Arrigo C, Bachi A, Cattaneo A, Canale C, Torrassa S, Saido TC, Markesbery W, Gambetti P, Tabaton M

beta-amyloid is different in normal aging and in Alzheimer disease.

J Biol Chem 2005; 34186-92. doi: 10.1074/jbc.M501694200

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Volta V, Ceci M, Emery B, Bachi A, Petfalski E, Tollervey D, Linder P, Marchisio PC, Piatti S, Biffo S

Sen34p depletion blocks tRNA splicing in vivo and delays rRNA processing.

Biochem Biophys Res Commun 2005; 89-94. doi: 10.1016/j.bbrc.2005.09.012

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Conti A, Ricchiuto P, Iannaccone S, Sferrazza B, Cattaneo A, Bachi A, Reggiani A, Beltramo M, Alessio M

Pigment epithelium-derived factor is differentially expressed in peripheral neuropathies.

Proteomics 2005; 4558-67. doi: 10.1002/pmic.200402088

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Botrugno OA, Paris S, Za L, Gualdoni S, Cattaneo A, Bachi A, de Curtis I

Characterization of the endogenous GIT1-betaPIX complex, and identification of its association to membranes.

Eur J Cell Biol 2006; 35-46. doi: 10.1016/j.ejcb.2005.09.018

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Salzano AM, Paron I, Pines A, Bachi A, Talamo F, Bivi N, Vascotto C, Damante G, Quadrifoglio F, Scaloni A, Tell G

Differential proteomic analysis of nuclear extracts from thyroid cell lines.

J Chromatogr B Analyt Technol Biomed Life Sci 2006; 41-50. doi: 10.1016/j.jchromb.2005.12.025

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Camerini S, Polci ML, Bachi A

Proteomics approaches to study the redox state of cysteine-containing proteins.

Ann Ist Super Sanita 2005; 451-7.

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Cursi S, Rufini A, Stagni V, Condò I, Matafora V, Bachi A, Bonifazi AP, Coppola L, Superti-Furga G, Testi R, Barilà D

Src kinase phosphorylates Caspase-8 on Tyr380: a novel mechanism of apoptosis suppression.

EMBO J 2006; 1895-905. doi: 10.1038/sj.emboj.7601085

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Curnis F, Longhi R, Crippa L, Cattaneo A, Dondossola E, Bachi A, Corti A

Spontaneous formation of L-isoaspartate and gain of function in fibronectin.

J Biol Chem 2006; 36466-76. doi: 10.1074/jbc.M604812200

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Lorusso A, Covino C, Priori G, Bachi A, Meldolesi J, Chieregatti E

Annexin2 coating the surface of enlargeosomes is needed for their regulated exocytosis.

EMBO J 2006; 5443-56. doi: 10.1038/sj.emboj.7601419

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Onofri F, Messa M, Matafora V, Bonanno G, Corradi A, Bachi A, Valtorta F, Benfenati F

Synapsin phosphorylation by SRC tyrosine kinase enhances SRC activity in synaptic vesicles.

J Biol Chem 2007; 15754-67. doi: 10.1074/jbc.M701051200

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Muzio M, Scielzo C, Frenquelli M, Bachi A, De Palma M, Alessio M, Ghia P, Caligaris-Cappio F

HS1 complexes with cytoskeleton adapters in normal and malignant chronic lymphocytic leukemia B cells.

Leukemia 2007; 2067-70. doi: 10.1038/sj.leu.2404744

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Galietta A, Gunby RH, Redaelli S, Stano P, Carniti C, Bachi A, Tucker PW, Tartari CJ, Huang CJ, Colombo E, Pulford K, Puttini M, Piazza RG, Ruchatz H, Villa A, Donella-Deana A, Marin O, Perrotti D, Gambacorti-Passerini C

NPM/ALK binds and phosphorylates the RNA/DNA-binding protein PSF in anaplastic large-cell lymphoma.

Blood 2007; 2600-9. doi: 10.1182/blood-2006-01-028647

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Piccoli G, Verpelli C, Tonna N, Romorini S, Alessio M, Nairn AC, Bachi A, Sala C

Proteomic analysis of activity-dependent synaptic plasticity in hippocampal neurons.

J Proteome Res 2007; 3203-15. doi: 10.1021/pr0701308

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Díaz VM, Bachi A, Blasi F

Purification of the Prep1 interactome identifies novel pathways regulated by Prep1.

Proteomics 2007; 2617-23. doi: 10.1002/pmic.200700197

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Camerini S, Polci ML, Restuccia U, Usuelli V, Malgaroli A, Bachi A

A novel approach to identify proteins modified by nitric oxide: the HIS-TAG switch method.

J Proteome Res 2007; 3224-31. doi: 10.1021/pr0701456

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Filannino MA, Matarrese M, Turolla EA, Masiello V, Moresco RM, Todde S, Verza E, Magni F, Cattaneo A, Bachi A, Kienle MG, Fazio F

Synthesis and carbon-11 labeling of (R)- and (S)-thionisoxetine, norepinephrine reuptake inhibitors, potential radioligands for positron emission tomography.

Appl Radiat Isot 2007; 1232-9. doi: 10.1016/j.apradiso.2007.06.004

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Díaz VM, Mori S, Longobardi E, Menendez G, Ferrai C, Keough RA, Bachi A, Blasi F

p160 Myb-binding protein interacts with Prep1 and inhibits its transcriptional activity.

Mol Cell Biol 2007; 7981-90. doi: 10.1128/MCB.01290-07

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Angelelli C, Magli A, Ferrari D, Ganassi M, Matafora V, Parise F, Razzini G, Bachi A, Ferrari S, Molinari S

Differentiation-dependent lysine 4 acetylation enhances MEF2C binding to DNA in skeletal muscle cells.

Nucleic Acids Res 2008; 915-28. doi: 10.1093/nar/gkm1114

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Antonioli B, Fermo I, Cainarca S, Marzorati S, Nano R, Baldissera M, Bachi A, Paroni R, Ricordi C, Bertuzzi F

Characterization of collagenase blend enzymes for human islet transplantation.

Transplantation 2007; 1568-75. doi: 10.1097/01.tp.0000295719.88525.60

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De Monte L, Sanvito F, Olivieri S, Viganò F, Doglioni C, Frasson M, Braga M, Bachi A, Dellabona P, Protti MP, Alessio M

Serological immunoreactivity against colon cancer proteome varies upon disease progression.

J Proteome Res 2008; 504-14. doi: 10.1021/pr070360m

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Santambrogio S, Cattaneo A, Bernascone I, Schwend T, Jovine L, Bachi A, Rampoldi L

Urinary uromodulin carries an intact ZP domain generated by a conserved C-terminal proteolytic cleavage.

Biochem Biophys Res Commun 2008; 410-3. doi: 10.1016/j.bbrc.2008.03.099

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Simó C, Bachi A, Cattaneo A, Guerrier L, Fortis F, Boschetti E, Podtelejnikov A, Righetti PG

Performance of combinatorial peptide libraries in capturing the low-abundance proteome of red blood cells. 1. Behavior of mono- to hexapeptides.

Anal Chem 2008; 3547-56. doi: 10.1021/ac702635v

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Corti V, Sanchez-Ruiz Y, Piccoli G, Bergamaschi A, Cannistraci CV, Pattini L, Cerutti S, Bachi A, Alessio M, Malgaroli A

Protein fingerprints of cultured CA3-CA1 hippocampal neurons: comparative analysis of the distribution of synaptosomal and cytosolic proteins.

BMC Neurosci 2008; 36. doi: 10.1186/1471-2202-9-36

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Bachi A, Simó C, Restuccia U, Guerrier L, Fortis F, Boschetti E, Masseroli M, Righetti PG

Performance of combinatorial peptide libraries in capturing the low-abundance proteome of red blood cells. 2. Behavior of resins containing individual amino acids.

Anal Chem 2008; 3557-65. doi: 10.1021/ac8001353

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Panfoli I, Musante L, Bachi A, Ravera S, Calzia D, Cattaneo A, Bruschi M, Bianchini P, Diaspro A, Morelli A, Pepe IM, Tacchetti C, Candiano G

Proteomic analysis of the retinal rod outer segment disks.

J Proteome Res 2008; 2654-69. doi: 10.1021/pr7006939

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Brocca L, D'Antona G, Bachi A, Pellegrino MA

Amino acid supplements improve native antioxidant enzyme expression in the skeletal muscle of diabetic mice.

Am J Cardiol 2008; 57E-62E. doi: 10.1016/j.amjcard.2008.03.002

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Di Girolamo F, Raggi C, Birago C, Pizzi E, Lalle M, Picci L, Pace T, Bachi A, de Jong J, Janse CJ, Waters AP, Sargiacomo M, Ponzi M

Plasmodium lipid rafts contain proteins implicated in vesicular trafficking and signalling as well as members of the PIR superfamily, potentially implicated in host immune system interactions.

Proteomics 2008; 2500-13. doi: 10.1002/pmic.200700763

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Colombo G, Rusconi F, Rubino T, Cattaneo A, Martegani E, Parolaro D, Bachi A, Zippel R

Transcriptomic and proteomic analyses of mouse cerebellum reveals alterations in RasGRF1 expression following in vivo chronic treatment with delta 9-tetrahydrocannabinol.

J Mol Neurosci 2009; 111-22. doi: 10.1007/s12031-008-9114-2

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Righetti PG, Bachi A

It can be done!

J Proteomics 2008; 253-4. doi: 10.1016/j.jprot.2008.07.002

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Bachi A, Bonaldi T

Quantitative proteomics as a new piece of the systems biology puzzle.

J Proteomics 2008; 357-67. doi: 10.1016/j.jprot.2008.07.001

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