Liberi G, Foiani M

Initiation of DNA replication: a new hint from archaea.

Cell 2004; 3-4. doi: 10.1016/s0092-8674(03)01072-9

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Masciadri B, Areces LB, Carpinelli P, Foiani M, Draetta G, Fiore F

Characterization of the BUD31 gene of Saccharomyces cerevisiae.

Biochem Biophys Res Commun 2004; 1342-50. doi: 10.1016/j.bbrc.2004.05.228

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Ira G, Pellicioli A, Balijja A, Wang X, Fiorani S, Carotenuto W, Liberi G, Bressan D, Wan L, Hollingsworth NM, Haber JE, Foiani M

DNA end resection, homologous recombination and DNA damage checkpoint activation require CDK1.

Nature 2004; 1011-7. doi: 10.1038/nature02964

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Liberi G, Maffioletti G, Lucca C, Chiolo I, Baryshnikova A, Cotta-Ramusino C, Lopes M, Pellicioli A, Haber JE, Foiani M

Rad51-dependent DNA structures accumulate at damaged replication forks in sgs1 mutants defective in the yeast ortholog of BLM RecQ helicase.

Genes Dev 2005; 339-50. doi: 10.1101/gad.322605

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Pellicioli A, Foiani M

Recombination at collapsed replication forks: the payoff for survival.

Mol Cell 2005; 614-5. doi: 10.1016/j.molcel.2005.05.018

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Chiolo I, Carotenuto W, Maffioletti G, Petrini JH, Foiani M, Liberi G

Srs2 and Sgs1 DNA helicases associate with Mre11 in different subcomplexes following checkpoint activation and CDK1-mediated Srs2 phosphorylation.

Mol Cell Biol 2005; 5738-51. doi: 10.1128/MCB.25.13.5738-5751.2005

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Pellicioli A, Foiani M

Signal transduction: how rad53 kinase is activated.

Curr Biol 2005; R769-71. doi: 10.1016/j.cub.2005.08.057

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Branzei D, Foiani M

The DNA damage response during DNA replication.

Curr Opin Cell Biol 2005; 568-75. doi: 10.1016/j.ceb.2005.09.003

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Lopes M, Foiani M, Sogo JM

Multiple mechanisms control chromosome integrity after replication fork uncoupling and restart at irreparable UV lesions.

Mol Cell 2006; 15-27. doi: 10.1016/j.molcel.2005.11.015

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Liberi G, Cotta-Ramusino C, Lopes M, Sogo J, Conti C, Bensimon A, Foiani M

Methods to study replication fork collapse in budding yeast.

Methods Enzymol 2006; 442-62. doi: 10.1016/S0076-6879(05)09026-9

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Branzei D, Foiani M

The Rad53 signal transduction pathway: Replication fork stabilization, DNA repair, and adaptation.

Exp Cell Res 2006; 2654-9. doi: 10.1016/j.yexcr.2006.06.012

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Branzei D, Sollier J, Liberi G, Zhao X, Maeda D, Seki M, Enomoto T, Ohta K, Foiani M

Ubc9- and mms21-mediated sumoylation counteracts recombinogenic events at damaged replication forks.

Cell 2006; 509-22. doi: 10.1016/j.cell.2006.08.050

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Branzei D, Foiani M

Interplay of replication checkpoints and repair proteins at stalled replication forks.

DNA Repair (Amst) 2007; 994-1003. doi: 10.1016/j.dnarep.2007.02.018

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Branzei D, Foiani M

RecQ helicases queuing with Srs2 to disrupt Rad51 filaments and suppress recombination.

Genes Dev 2007; 3019-26. doi: 10.1101/gad.1624707

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Branzei D, Foiani M

Template switching: from replication fork repair to genome rearrangements.

Cell 2007; 1228-30. doi: 10.1016/j.cell.2007.12.007

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Tavecchio M, Simone M, Erba E, Chiolo I, Liberi G, Foiani M, D'Incalci M, Damia G

Role of homologous recombination in trabectedin-induced DNA damage.

Eur J Cancer 2008; 609-18. doi: 10.1016/j.ejca.2008.01.003

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Branzei D, Foiani M

Regulation of DNA repair throughout the cell cycle.

Nat Rev Mol Cell Biol 2008; 297-308. doi: 10.1038/nrm2351

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Bermejo R, Branzei D, Foiani M

Cohesion by topology: sister chromatids interlocked by DNA.

Genes Dev 2008; 2297-301. doi: 10.1101/gad.1719308

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Branzei D, Vanoli F, Foiani M

SUMOylation regulates Rad18-mediated template switch.

Nature 2008; 915-20. doi: 10.1038/nature07587

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Sollier J, Driscoll R, Castellucci F, Foiani M, Jackson SP, Branzei D

The Saccharomyces cerevisiae Esc2 and Smc5-6 proteins promote sister chromatid junction-mediated intra-S repair.

Mol Biol Cell 2009; 1671-82. doi: 10.1091/mbc.e08-08-0875

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Bernstein KA, Shor E, Sunjevaric I, Fumasoni M, Burgess RC, Foiani M, Branzei D, Rothstein R

Sgs1 function in the repair of DNA replication intermediates is separable from its role in homologous recombinational repair.

EMBO J 2009; 915-25. doi: 10.1038/emboj.2009.28

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Branzei D, Foiani M

The checkpoint response to replication stress.

DNA Repair (Amst) 2009; 1038-46. doi: 10.1016/j.dnarep.2009.04.014

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Bermejo R, Capra T, Gonzalez-Huici V, Fachinetti D, Cocito A, Natoli G, Katou Y, Mori H, Kurokawa K, Shirahige K, Foiani M

Genome-organizing factors Top2 and Hmo1 prevent chromosome fragility at sites of S phase transcription.

Cell 2009; 870-84. doi: 10.1016/j.cell.2009.06.022

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Bermejo R, Katou YM, Shirahige K, Foiani M

ChIP-on-chip analysis of DNA topoisomerases.

Methods Mol Biol 2009; 103-18. doi: 10.1007/978-1-60761-340-4_9

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Branzei D, Foiani M

Leaping forks at inverted repeats.

Genes Dev 2010; 5-9. doi: 10.1101/gad.1884810

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Branzei D, Foiani M

Maintaining genome stability at the replication fork.

Nat Rev Mol Cell Biol 2010; 208-19. doi: 10.1038/nrm2852

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Liberi G, Foiani M

The double life of Holliday junctions.

Cell Res 2010; 611-3. doi: 10.1038/cr.2010.73

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Ferrari E, Lucca C, Foiani M

A lethal combination for cancer cells: synthetic lethality screenings for drug discovery.

Eur J Cancer 2010; 2889-95. doi: 10.1016/j.ejca.2010.07.031

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Fachinetti D, Bermejo R, Cocito A, Minardi S, Katou Y, Kanoh Y, Shirahige K, Azvolinsky A, Zakian VA, Foiani M

Replication termination at eukaryotic chromosomes is mediated by Top2 and occurs at genomic loci containing pausing elements.

Mol Cell 2010; 595-605. doi: 10.1016/j.molcel.2010.07.024

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Giannattasio M, Zwicky K, Follonier C, Foiani M, Lopes M, Branzei D

Visualization of recombination-mediated damage bypass by template switching.

Nat Struct Mol Biol 2014; 884-92. doi: 10.1038/nsmb.2888

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Kumar A, Mazzanti M, Mistrik M, Kosar M, Beznoussenko GV, Mironov AA, Garrè M, Parazzoli D, Shivashankar GV, Scita G, Bartek J, Foiani M

ATR mediates a checkpoint at the nuclear envelope in response to mechanical stress.

Cell 2014; 633-46. doi: 10.1016/j.cell.2014.05.046

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Robert T, Vanoli F, Chiolo I, Shubassi G, Bernstein KA, Rothstein R, Botrugno OA, Parazzoli D, Oldani A, Minucci S, Foiani M

HDACs link the DNA damage response, processing of double-strand breaks and autophagy.

Nature 2011; 74-79. doi: 10.1038/nature09803

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Gómez-González B, García-Rubio M, Bermejo R, Gaillard H, Shirahige K, Marín A, Foiani M, Aguilera A

Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles.

EMBO J 2011; 3106-19. doi: 10.1038/emboj.2011.206

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Lopes J, Piazza A, Bermejo R, Kriegsman B, Colosio A, Teulade-Fichou MP, Foiani M, Nicolas A

G-quadruplex-induced instability during leading-strand replication.

EMBO J 2011; 4033-46. doi: 10.1038/emboj.2011.316

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Shubassi G, Robert T, Vanoli F, Minucci S, Foiani M

Acetylation: a novel link between double-strand break repair and autophagy.

Cancer Res 2012; 1332-5. doi: 10.1158/0008-5472.CAN-11-3172

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Bermejo R, Lai MS, Foiani M

Preventing replication stress to maintain genome stability: resolving conflicts between replication and transcription.

Mol Cell 2012; 710-8. doi: 10.1016/j.molcel.2012.03.001

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Botrugno OA, Robert T, Vanoli F, Foiani M, Minucci S

Molecular pathways: old drugs define new pathways: non-histone acetylation at the crossroads of the DNA damage response and autophagy.

Clin Cancer Res 2012; 2436-42. doi: 10.1158/1078-0432.CCR-11-0767

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Lai MS, Foiani M

Dna2 offers support for stalled forks.

Cell 2012; 1181-3. doi: 10.1016/j.cell.2012.05.021

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Bermejo R, Kumar A, Foiani M

Preserving the genome by regulating chromatin association with the nuclear envelope.

Trends Cell Biol 2012; 465-73. doi: 10.1016/j.tcb.2012.05.007

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Alzu A, Bermejo R, Begnis M, Lucca C, Piccini D, Carotenuto W, Saponaro M, Brambati A, Cocito A, Foiani M, Liberi G

Senataxin associates with replication forks to protect fork integrity across RNA-polymerase-II-transcribed genes.

Cell 2012; 835-846. doi: 10.1016/j.cell.2012.09.041

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Foiani M, Bartek J

Golgi feels DNA's pain.

Cell 2014; 392-3. doi: 10.1016/j.cell.2014.01.030

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Achar YJ, Foiani M

Dangerous liaisons: MYCN meets condensins.

Cell Cycle 2014; 1225-6. doi: 10.4161/cc.28569

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Elgendy M, Ciro M, Abdel-Aziz AK, Belmonte G, Dal Zuffo R, Mercurio C, Miracco C, Lanfrancone L, Foiani M, Minucci S

Beclin 1 restrains tumorigenesis through Mcl-1 destabilization in an autophagy-independent reciprocal manner.

Nat Commun 2014; 5637. doi: 10.1038/ncomms6637

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Gay S, Foiani M

Nuclear envelope and chromatin, lock and key of genome integrity.

Int Rev Cell Mol Biol 2015; 267-330. doi: 10.1016/bs.ircmb.2015.03.001

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Rossi SE, Ajazi A, Carotenuto W, Foiani M, Giannattasio M

Rad53-Mediated Regulation of Rrm3 and Pif1 DNA Helicases Contributes to Prevention of Aberrant Fork Transitions under Replication Stress.

Cell Rep 2015; 80-92. doi: 10.1016/j.celrep.2015.08.073

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Awasthi P, Foiani M, Kumar A

ATM and ATR signaling at a glance.

J Cell Sci 2015; 4255-62. doi: 10.1242/jcs.169730

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Kidiyoor GR, Kumar A, Foiani M

ATR-mediated regulation of nuclear and cellular plasticity.

DNA Repair (Amst) 2016; 143-150. doi: 10.1016/j.dnarep.2016.05.020

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Muñoz MJ, Nieto Moreno N, Giono LE, Cambindo Botto AE, Dujardin G, Bastianello G, Lavore S, Torres-Méndez A, Menck CFM, Blencowe BJ, Irimia M, Foiani M, Kornblihtt AR

Major Roles for Pyrimidine Dimers, Nucleotide Excision Repair, and ATR in the Alternative Splicing Response to UV Irradiation.

Cell Rep 2017; 2868-2879. doi: 10.1016/j.celrep.2017.02.066

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Ferrari E, Bruhn C, Peretti M, Cassani C, Carotenuto WV, Elgendy M, Shubassi G, Lucca C, Bermejo R, Varasi M, Minucci S, Longhese MP, Foiani M

PP2A Controls Genome Integrity by Integrating Nutrient-Sensing and Metabolic Pathways with the DNA Damage Response.

Mol Cell 2017; 266-281.e4. doi: 10.1016/j.molcel.2017.05.027

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Brambati A, Zardoni L, Achar YJ, Piccini D, Galanti L, Colosio A, Foiani M, Liberi G

Dormant origins and fork protection mechanisms rescue sister forks arrested by transcription.

Nucleic Acids Res 2018; 1227-1239. doi: 10.1093/nar/gkx945

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